STRINGSTRING
R2601_14855 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14855" - ErfK/YbiS/YcfS/YnhG family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14855ErfK/YbiS/YcfS/YnhG family protein (133 aa)    
Predicted Functional Partners:
R2601_17829
ErfK/YbiS/YcfS/YnhG family protein (186 aa)
 
          0.686
R2601_12121
ErfK/YbiS/YcfS/YnhG family protein (185 aa)
 
          0.685
R2601_07033
ErfK/YbiS/YcfS/YnhG family protein (172 aa)
 
          0.667
R2601_14865
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein (195 aa)
 
          0.650
R2601_14850
23S rRNA (Uracil-5-)-methyltransferase rumA (407 aa)
              0.535
R2601_12126
Uncharacterized protein (250 aa)
 
          0.495
R2601_15312
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein (186 aa)
 
          0.484
accA
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA (320 aa)
   
        0.473
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (206 aa)
              0.451
pyrE
Orotate phosphoribosyltransferase ; Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) (226 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]