STRINGSTRING
R2601_14880 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14880" - Uncharacterized protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14880Uncharacterized protein (273 aa)    
Predicted Functional Partners:
R2601_09240
Uncharacterized protein (354 aa)
   
 
    0.862
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
    0.847
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
 
  0.847
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
 
  0.847
R2601_21812
NADH-quinone oxidoreductase (666 aa)
   
 
    0.833
R2601_17978
NADH-ubiquinone oxidoreductase family protein (103 aa)
   
 
    0.820
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
     
 
    0.816
nuoI
NDH-1 subunit I ; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (164 aa)
   
    0.790
R2601_13789
NADH ubiquinone oxidoreductase, putative (327 aa)
 
 
    0.776
R2601_14875
Protoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
   
   
  0.765
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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