STRINGSTRING
R2601_14885 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14885" - Competence protein F in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14885Competence protein F (241 aa)    
Predicted Functional Partners:
R2601_14890
Glutaredoxin (85 aa)
              0.801
R2601_14880
Uncharacterized protein (273 aa)
              0.758
R2601_09952
Competence protein ComM (504 aa)
 
   
  0.749
purD
Phosphoribosylglycinamide synthetase (420 aa)
       
    0.745
R2601_25246
Competence protein (678 aa)
 
   
  0.732
R2601_17819
DNA processing protein DprA, putative (375 aa)
 
 
  0.717
R2601_14895
Transcriptional regulator, putative (146 aa)
              0.687
R2601_23755
Uncharacterized protein (386 aa)
   
      0.606
R2601_14875
Protoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
              0.579
mutS
DNA mismatch repair protein MutS ; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (874 aa)
 
          0.565
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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