STRINGSTRING
R2601_14960 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14960" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14960Uncharacterized protein (325 aa)    
Predicted Functional Partners:
R2601_14955
Nucleotidyltransferase family protein (226 aa)
 
    0.997
R2601_14965
Uncharacterized protein (157 aa)
            0.968
R2601_14950
Uncharacterized protein (976 aa)
              0.933
R2601_14945
ATP-dependent DNA helicase, UvrD/Rep family protein (1125 aa)
              0.887
R2601_26051
Beta-N-acetylhexosaminidase (335 aa)
 
   
    0.885
R2601_14970
Uncharacterized protein (497 aa)
 
          0.844
R2601_14940
Thioredoxin (106 aa)
              0.794
glmU
Bifunctional protein GlmU ; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain (449 aa)
     
 
    0.785
R2601_14975
Sensor histidine kinase RegB (463 aa)
 
          0.612
R2601_16715
Uncharacterized protein (108 aa)
   
          0.596
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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