STRINGSTRING
R2601_14995 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14995" - HD domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14995HD domain protein (188 aa)    
Predicted Functional Partners:
R2601_14990
Acetyltransferase, GNAT family protein (161 aa)
              0.866
R2601_20576
Alkaline phosphatase (2191 aa)
     
 
    0.824
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
       
    0.821
R2601_26031
2’-deoxycytidine 5’-triphosphate deaminase (358 aa)
   
          0.778
R2601_13990
Uncharacterized protein (249 aa)
   
          0.755
R2601_15000
Methyltransferase FkbM family protein (229 aa)
              0.742
R2601_24140
Uncharacterized protein (150 aa)
 
          0.740
R2601_20976
DNA-binding protein, putative (127 aa)
 
   
    0.738
R2601_18438
Uncharacterized protein (119 aa)
   
          0.673
R2601_00470
FlbT protein (136 aa)
   
          0.664
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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