STRINGSTRING
R2601_15040 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15040" - Uncharacterized protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15040Uncharacterized protein (139 aa)    
Predicted Functional Partners:
R2601_15050
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (320 aa)
              0.914
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (359 aa)
              0.887
R2601_15045
YCII-related domain protein (90 aa)
              0.887
R2601_23208
Cytochrome-c oxidase chain II/c (319 aa)
       
    0.812
R2601_15060
Uncharacterized protein (248 aa)
              0.722
R2601_15070
HemY domain protein (511 aa)
              0.690
R2601_13789
NADH ubiquinone oxidoreductase, putative (327 aa)
   
   
    0.651
R2601_19447
Cytochrome c oxidase subunit 1 ; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B (557 aa)
   
   
    0.643
R2601_15065
Uncharacterized protein (500 aa)
              0.532
R2601_18428
NADH-ubiquinone oxidoreductase (127 aa)
   
   
    0.473
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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