STRINGSTRING
R2601_15060 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15060" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15060Uncharacterized protein (248 aa)    
Predicted Functional Partners:
R2601_05903
Precorrin-2 C20-methyltransferase (246 aa)
         
    0.900
R2601_15065
Uncharacterized protein (500 aa)
 
          0.888
R2601_15070
HemY domain protein (511 aa)
 
          0.888
hemC
Pre-uroporphyrinogen synthase ; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (319 aa)
 
   
    0.820
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (359 aa)
 
          0.807
R2601_15050
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (320 aa)
              0.795
R2601_15045
YCII-related domain protein (90 aa)
 
          0.793
R2601_15040
Uncharacterized protein (139 aa)
              0.722
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.642
R2601_09797
Uncharacterized protein (237 aa)
   
          0.553
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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