STRINGSTRING
R2601_15070 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15070" - HemY domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15070HemY domain protein (511 aa)    
Predicted Functional Partners:
R2601_15065
Uncharacterized protein (500 aa)
 
          0.955
R2601_15060
Uncharacterized protein (248 aa)
 
          0.888
R2601_11119
Coproporphyrinogen oxidase (298 aa)
         
  0.792
R2601_14875
Protoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
         
  0.786
R2601_14950
Uncharacterized protein (976 aa)
   
          0.759
R2601_13990
Uncharacterized protein (249 aa)
   
          0.759
R2601_18278
Uncharacterized protein (341 aa)
   
          0.751
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.739
R2601_11429
Uncharacterized protein (176 aa)
   
          0.738
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.730
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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