STRINGSTRING
R2601_15145 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15145" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15145Uncharacterized protein (166 aa)    
Predicted Functional Partners:
R2601_15150
2-hydroxyacid dehydrogenase (328 aa)
              0.790
R2601_18303
Uncharacterized protein (258 aa)
   
          0.765
R2601_08913
Transcriptional regulator, CarD family protein (169 aa)
   
          0.739
ftsQ
Cell division protein FtsQ ; Essential cell division protein (299 aa)
   
          0.729
lptD
LPS-assembly protein LptD ; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (727 aa)
   
          0.697
R2601_08571
Transglycosylase, Slt family protein (653 aa)
   
          0.681
rbfA
Ribosome-binding factor A ; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (131 aa)
   
          0.680
R2601_14950
Uncharacterized protein (976 aa)
   
          0.679
rpsU
30S ribosomal protein S21 (68 aa)
   
          0.673
R2601_23388
Uncharacterized protein (158 aa)
   
          0.668
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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