STRINGSTRING
R2601_15210 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15210" - Chain length determinant protein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15210Chain length determinant protein, putative (441 aa)    
Predicted Functional Partners:
R2601_15200
Non-ribosomal peptide synthetase (1564 aa)
 
          0.880
R2601_15190
Non-ribosomal peptide synthase (2152 aa)
 
          0.878
R2601_15195
Glycosyl transferase, group 2 family protein (340 aa)
 
          0.875
R2601_15185
Polysaccharide biosynthesis protein (454 aa)
 
          0.846
R2601_15180
Glycosyl transferase, group 2 family protein (253 aa)
 
          0.840
R2601_15205
Phosphopantetheinyl transferase PptA, putative (218 aa)
 
          0.810
R2601_15175
Glycosyl transferase, group 1 family protein (400 aa)
 
          0.799
R2601_15215
Exopolysaccharide biosynthesis domain protein (380 aa)
 
          0.786
R2601_15170
Uncharacterized protein (996 aa)
   
          0.778
R2601_14340
Glycosyl transferase, group 2 family protein (319 aa)
   
          0.778
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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