STRINGSTRING
R2601_15215 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15215" - Exopolysaccharide biosynthesis domain protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15215Exopolysaccharide biosynthesis domain protein (380 aa)    
Predicted Functional Partners:
R2601_04698
Exopolysaccharide polymerization/transport protein (763 aa)
 
 
 
  0.879
R2601_15185
Polysaccharide biosynthesis protein (454 aa)
 
   
  0.870
R2601_15492
Bacterial sugar transferase (229 aa)
 
   
  0.866
R2601_04723
WcaJ protein (220 aa)
 
   
  0.861
R2601_15115
Undecaprenyl-phosphate galactosephosphotransferase (459 aa)
 
   
  0.856
R2601_14620
Sugar transferase (203 aa)
 
   
  0.849
R2601_18328
Polysaccharide biosynthesis/export protein (383 aa)
 
 
  0.837
R2601_14625
Putative capsule polysaccharide exporter (363 aa)
 
 
  0.821
R2601_14320
Glycosyl transferase, WecB/TagA/CpsF family protein (254 aa)
 
   
  0.820
R2601_14335
Glycosyl transferase, group 1 family protein (411 aa)
 
   
  0.798
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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