STRINGSTRING
R2601_15357 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15357" - UPF0176 protein R2601_15357 in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15357UPF0176 protein R2601_15357 (309 aa)    
Predicted Functional Partners:
R2601_09250
Uncharacterized protein (81 aa)
       
      0.566
R2601_08421
Putative phage tail minor protein (220 aa)
       
      0.566
R2601_15362
Pyrazinamidase/nicotinamidase (197 aa)
              0.482
R2601_22537
BolA-like protein (80 aa)
   
        0.464
R2601_08031
BolA protein, truncation (85 aa)
   
        0.464
R2601_25096
Isoprenyl transferase ; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids (241 aa)
     
      0.456
R2601_10032
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (215 aa)
 
        0.418
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]