STRINGSTRING
R2601_15417 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15417" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15417Uncharacterized protein (867 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (421 aa)
 
          0.828
R2601_13644
Uncharacterized protein (679 aa)
   
          0.764
R2601_10874
Cell division protein FtsX (177 aa)
   
          0.762
R2601_13830
Uncharacterized protein (50 aa)
   
          0.753
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.751
R2601_13639
Uncharacterized protein (935 aa)
   
          0.744
R2601_13819
Uncharacterized protein (272 aa)
   
          0.742
R2601_10879
Uncharacterized protein (71 aa)
   
          0.714
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.714
R2601_13634
Uncharacterized protein (291 aa)
   
          0.707
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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