STRINGSTRING
R2601_15442 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15442" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15442Uncharacterized protein (324 aa)    
Predicted Functional Partners:
R2601_15437
Transcriptional regulator, TetR family protein (209 aa)
              0.587
R2601_17202
Uncharacterized protein (227 aa)
     
      0.503
R2601_05103
Iron-sulfur cluster-binding protein (638 aa)
     
      0.503
R2601_13639
Uncharacterized protein (935 aa)
   
          0.463
R2601_10664
Autoinducer-binding transcriptional regulator LuxR (223 aa)
   
          0.449
R2601_15447
DNA polymerase I (935 aa)
              0.443
R2601_18810
Regulatory protein, putative (696 aa)
 
          0.435
R2601_14875
Protoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
         
  0.421
R2601_07821
Cytochrome c family protein (135 aa)
   
          0.403
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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