STRINGSTRING
R2601_15472 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15472" - ADA regulatory protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15472ADA regulatory protein (278 aa)    
Predicted Functional Partners:
nth
DNA-(apurinic or apyrimidinic site) lyase ; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (214 aa)
         
  0.715
R2601_15447
DNA polymerase I (935 aa)
     
 
  0.692
rpoD
Sigma-70 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (661 aa)
     
 
  0.648
R2601_23795
Phospholipase/carboxylesterase family protein (430 aa)
 
 
  0.641
R2601_13935
Transcriptional regulatory protein (186 aa)
 
 
  0.615
R2601_15477
OmpA domain protein (221 aa)
              0.565
R2601_15467
Uncharacterized protein (371 aa)
              0.564
R2601_14080
Alkylated DNA repair protein, putative (201 aa)
   
   
  0.562
pheT
Phenylalanyl-tRNA synthetase beta subunit (798 aa)
              0.550
R2601_09947
RNA polymerase sigma factor (292 aa)
     
 
  0.537
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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