STRINGSTRING
R2601_15497 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15497" - Exonuclease, putative in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
R2601_15497Exonuclease, putative (204 aa)    
Predicted Functional Partners:
R2601_14170
Ribonuclease R (506 aa)
   
  0.914
rph
tRNA nucleotidyltransferase ; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (237 aa)
     
  0.906
R2601_15502
Uncharacterized protein (202 aa)
              0.887
R2601_14165
Ribonuclease R (235 aa)
     
  0.879
R2601_15507
Uncharacterized protein (165 aa)
              0.877
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
     
  0.824
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
              0.822
rne
Ribonuclease E ; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs (985 aa)
     
 
  0.792
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (120 aa)
       
    0.782
R2601_15517
Ribosomal subunit interface protein, putative (187 aa)
 
          0.767
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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