STRINGSTRING
R2601_15507 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15507" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15507Uncharacterized protein (165 aa)    
Predicted Functional Partners:
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
   
 
  0.944
R2601_15502
Uncharacterized protein (202 aa)
 
          0.920
lptD
LPS-assembly protein LptD ; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (727 aa)
 
  0.887
R2601_15497
Exonuclease, putative (204 aa)
              0.877
R2601_15522
PTS IIA-like nitrogen-regulatory protein PtsN (154 aa)
 
        0.698
R2601_15517
Ribosomal subunit interface protein, putative (187 aa)
   
        0.668
R2601_24345
Predicted permease (371 aa)
   
  0.629
R2601_24340
Permease, YjgP/YjgQ family protein (364 aa)
   
  0.629
R2601_16865
PTS system IIA component, Man family protein (132 aa)
 
 
      0.621
R2601_08908
Glutathione-regulated potassium-efflux system protein (623 aa)
     
      0.605
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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