STRINGSTRING
R2601_15587 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15587" - Serine protease in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15587Serine protease (235 aa)    
Predicted Functional Partners:
R2601_16570
Uncharacterized protein (216 aa)
   
          0.767
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.756
R2601_16845
Uncharacterized protein (271 aa)
   
          0.739
R2601_11544
Uncharacterized protein (263 aa)
   
          0.738
R2601_15582
Serine protease (250 aa)
 
       
0.725
R2601_16565
Uncharacterized protein (94 aa)
   
          0.688
R2601_26456
Uncharacterized protein (459 aa)
   
          0.685
R2601_10479
Uncharacterized protein (249 aa)
   
          0.665
R2601_09078
Lipoprotein, putative (286 aa)
   
          0.664
R2601_26056
Uncharacterized protein (335 aa)
   
          0.654
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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