STRINGSTRING
R2601_15667 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15667" - Cytochrome c family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15667Cytochrome c family protein (144 aa)    
Predicted Functional Partners:
R2601_15672
Multicopper oxidase domain protein (457 aa)
              0.824
R2601_15677
Cytochrome c (144 aa)
              0.700
R2601_15662
Uncharacterized protein (110 aa)
              0.599
R2601_15657
Uncharacterized protein (253 aa)
 
          0.561
R2601_07058
Cytochrome c family protein (160 aa)
 
          0.529
R2601_22402
TRAP transporter, DctQ subunit (233 aa)
   
          0.494
R2601_15742
Uncharacterized protein (145 aa)
   
          0.478
R2601_15652
Uncharacterized protein (66 aa)
              0.462
R2601_07358
Probable c-type cytochrome (111 aa)
 
          0.457
R2601_19529
Uncharacterized protein (120 aa)
   
          0.453
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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