STRINGSTRING
R2601_15712 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15712" - Transcriptional Regulator, GntR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15712Transcriptional Regulator, GntR family protein (213 aa)    
Predicted Functional Partners:
R2601_22696
Transcriptional regulator, GntR family protein (162 aa)
   
          0.777
R2601_01743
Transcriptional regulatory protein (235 aa)
   
          0.775
R2601_18730
Transcriptional regulator, GntR family protein (230 aa)
   
          0.774
R2601_00005
Transcriptional regulator, GntR family protein (81 aa)
   
          0.772
R2601_10159
Regulatory protein GntR, HTH (213 aa)
   
          0.771
R2601_01658
Transcriptional regulator, GntR family protein (240 aa)
   
          0.757
R2601_15717
Membrane protein (274 aa)
         
  0.732
R2601_12900
Pyruvate dehydrogenase complex repressor (256 aa)
   
   
  0.644
R2601_17117
Transcriptional regulator, GntR family protein (216 aa)
   
          0.620
R2601_15707
ABC-type dipeptide transport system, periplasmic component (535 aa)
 
          0.605
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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