STRINGSTRING
R2601_15722 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15722" - ABC transporter, inner membrane subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15722ABC transporter, inner membrane subunit (377 aa)    
Predicted Functional Partners:
R2601_15727
ABC transporter, ATPase subunit (263 aa)
 
 
  0.998
R2601_15732
Putative ABC transporter, periplasmic substrate-binding protein (579 aa)
 
  0.998
R2601_24225
ABC transporter, ATP-binding protein (255 aa)
 
 
  0.981
R2601_15737
Uncharacterized protein (201 aa)
 
 
    0.980
R2601_18433
Uncharacterized protein (149 aa)
 
  0.964
R2601_11951
Toluene tolerance family protein (200 aa)
       
    0.782
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
 
   
    0.631
murA
UDP-N-acetylglucosamine enolpyruvyl transferase ; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (423 aa)
   
        0.526
R2601_11946
Putative lipoprotein (237 aa)
         
  0.520
R2601_24205
DNA repair protein radA ; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (454 aa)
   
        0.513
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]