STRINGSTRING
R2601_15880 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_15880" - Transposase, IS4 in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_15880Transposase, IS4 (163 aa)    
Predicted Functional Partners:
R2601_15875
ISMca1, transposase (212 aa)
          0.974
R2601_21371
ISGsu2, transposase (150 aa)
 
          0.848
R2601_06298
ISGsu2, transposase (146 aa)
 
          0.848
R2601_01543
ISGsu2, transposase (150 aa)
 
          0.847
R2601_15870
Uncharacterized protein (128 aa)
              0.448
R2601_15865
Uncharacterized protein (331 aa)
              0.448
R2601_15860
Hypothetical cytosolic protein (166 aa)
              0.444
R2601_15890
Uncharacterized protein (660 aa)
              0.430
R2601_15885
Uncharacterized protein (295 aa)
              0.430
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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