STRINGSTRING
R2601_16005 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16005" - Probable phosphoprotein phosphatase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16005Probable phosphoprotein phosphatase (242 aa)    
Predicted Functional Partners:
R2601_16010
Uncharacterized protein (232 aa)
        0.983
R2601_16115
Serine/threonine protein kinase (445 aa)
 
  0.975
R2601_22057
Serine/Threonine protein kinase (707 aa)
 
  0.971
R2601_16015
Uncharacterized protein (1193 aa)
 
        0.964
R2601_16020
Uncharacterized protein (465 aa)
 
        0.961
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
     
  0.896
R2601_16040
FHA domain protein, putative (453 aa)
 
   
  0.867
R2601_16000
Uncharacterized protein (340 aa)
              0.859
R2601_22102
Uncharacterized protein (540 aa)
 
   
  0.783
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
     
 
  0.705
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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