STRINGSTRING
R2601_16120 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16120" - HAMP domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16120HAMP domain protein (290 aa)    
Predicted Functional Partners:
R2601_16115
Serine/threonine protein kinase (445 aa)
 
        0.905
R2601_18715
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase (1154 aa)
 
   
  0.838
R2601_16110
Uncharacterized protein (351 aa)
              0.779
R2601_16125
Uncharacterized protein (333 aa)
 
          0.686
R2601_16105
Uncharacterized protein (169 aa)
 
          0.641
R2601_16100
Uncharacterized protein (503 aa)
 
          0.638
R2601_12508
Uncharacterized protein (147 aa)
   
          0.592
R2601_16165
Hydrogen uptake histidine-kinase (443 aa)
 
 
  0.582
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
 
 
  0.563
R2601_18513
Sensor histidine kinase (891 aa)
   
 
  0.554
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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