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R2601_16140 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16140" - RNA polymerase sigma-70 factor in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16140RNA polymerase sigma-70 factor (178 aa)    
Predicted Functional Partners:
R2601_16130
Serine protease (389 aa)
 
          0.913
R2601_16135
Uncharacterized protein (207 aa)
              0.859
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
       
 
  0.566
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
     
 
  0.551
R2601_16125
Uncharacterized protein (333 aa)
              0.527
R2601_09305
Periplasmic serine protease, DO/DeqQ family protein (462 aa)
   
   
  0.518
R2601_08321
Periplasmic serine protease, DO/DeqQ family protein (494 aa)
   
   
  0.518
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
              0.516
R2601_16115
Serine/threonine protein kinase (445 aa)
     
 
  0.511
rnc
Ribonuclease III ; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (227 aa)
         
  0.455
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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