STRINGSTRING
R2601_16335 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16335" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16335Uncharacterized protein (557 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
 
  0.952
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
  0.951
R2601_18538
Metallo-beta-lactamase family protein (288 aa)
 
  0.938
R2601_12810
Beta-lactamase-like protein (291 aa)
 
  0.930
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
 
  0.905
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
 
  0.905
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
   
  0.884
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
   
  0.884
R2601_22367
Sulfite reductase, putative (557 aa)
     
  0.854
R2601_05893
CobG (378 aa)
     
  0.854
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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