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rpmE protein (Pelagibaca bermudensis) - STRING interaction network
"rpmE" - 50S ribosomal protein L31 in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
rpmE50S ribosomal protein L31 ; Binds the 23S rRNA (73 aa)    
Predicted Functional Partners:
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (127 aa)
   
  0.995
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (164 aa)
 
  0.992
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (152 aa)
   
  0.986
rpmB
50S ribosomal protein L28 (96 aa)
   
  0.979
rplQ
50S ribosomal protein L17 (139 aa)
   
  0.979
rpmJ
50S ribosomal protein L36 (41 aa)
   
  0.978
rpmA
50S ribosomal protein L27 (89 aa)
   
  0.977
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (192 aa)
   
  0.965
rpmG
50S ribosomal protein L33 (55 aa)
   
  0.960
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (119 aa)
   
  0.959
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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