STRINGSTRING
R2601_16370 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16370" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16370Uncharacterized protein (280 aa)    
Predicted Functional Partners:
R2601_25291
Uncharacterized protein (261 aa)
   
          0.699
rimM
Ribosome maturation factor RimM ; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (173 aa)
   
        0.675
R2601_16360
Uncharacterized protein (265 aa)
              0.664
R2601_00475
Uncharacterized protein (274 aa)
   
          0.656
rpsP
30S ribosomal protein S16 (124 aa)
   
        0.567
R2601_19994
Uncharacterized protein (333 aa)
   
          0.530
R2601_22427
Mechanosensitive ion channel family protein (559 aa)
   
          0.511
R2601_11799
Acetyltransferase, GNAT family protein (145 aa)
   
          0.496
R2601_23620
Uncharacterized protein (169 aa)
   
          0.484
R2601_11519
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family (600 aa)
   
          0.478
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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