STRINGSTRING
R2601_16385 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16385" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16385Uncharacterized protein (201 aa)    
Predicted Functional Partners:
ffh
Fifty-four homolog ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components (502 aa)
              0.914
R2601_16380
Chorismate mutase (101 aa)
              0.914
R2601_16400
Acetyltransferase, GNAT family protein (177 aa)
 
       
0.884
R2601_16390
Acetyltransferase, GNAT family protein (172 aa)
 
       
0.884
R2601_16395
Acetyltransferase, GNAT family protein (176 aa)
 
       
0.878
rpsP
30S ribosomal protein S16 (124 aa)
              0.776
R2601_22327
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (410 aa)
   
 
  0.685
R2601_05613
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (403 aa)
   
 
  0.685
rpsD
30S ribosomal protein S4 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (206 aa)
   
      0.605
R2601_20431
Acetyltransferase, GNAT family protein (159 aa)
 
 
  0.533
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (12%) [HD]