STRINGSTRING
R2601_16420 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16420" - Integral membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16420Integral membrane protein (282 aa)    
Predicted Functional Partners:
R2601_16415
Transcriptional regulator, LysR family protein (293 aa)
              0.829
R2601_26846
Uncharacterized protein (162 aa)
   
          0.604
R2601_14990
Acetyltransferase, GNAT family protein (161 aa)
   
          0.602
R2601_05668
Uncharacterized protein (147 aa)
   
          0.577
R2601_22656
Nickel/cobalt efflux system (308 aa)
   
          0.576
R2601_17654
Efflux ABC transporter, transmembrane ATP-binding protein (582 aa)
   
      0.575
R2601_14845
ABC multidrug efflux pump, fused ATPase and inner membrane subunits (615 aa)
   
      0.575
R2601_14840
ABC transporter, transmembrane ATP-binding protein (614 aa)
   
      0.575
R2601_12196
ABC transporter, ATP binding/permease protein (599 aa)
   
      0.575
R2601_02353
ABC multidrug efflux transporter, fused ATPase and inner membrane subunits (566 aa)
   
      0.575
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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