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R2601_16520 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16520" - Aspartate aminotransferase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16520Aspartate aminotransferase (394 aa)    
Predicted Functional Partners:
R2601_10489
Prephenate dehydratase (277 aa)
   
 
  0.981
R2601_16525
Sulfurtransferase (285 aa)
 
 
    0.976
R2601_18950
Aspartate aminotransferase (400 aa)
   
  0.856
mdh
Malate dehydrogenase ; Catalyzes the reversible oxidation of malate to oxaloacetate (320 aa)
     
  0.848
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
 
    0.841
R2601_12990
Glutamate synthase, large subunit (1537 aa)
         
  0.835
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
     
 
  0.835
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
     
 
    0.813
hisC
Imidazole acetol-phosphate transaminase (361 aa)
     
 
  0.813
R2601_12523
Aminotransferase class IV , putative D-alanine aminotransferase (287 aa)
     
 
  0.812
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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