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R2601_16535 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16535" - Periplasmic sensor signal transduction histidine kinase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_16535Periplasmic sensor signal transduction histidine kinase (448 aa)    
Predicted Functional Partners:
R2601_16540
Transcriptional regulator, winged helix family protein (222 aa)
 
  0.995
R2601_06623
Response regulator receiver-Transcriptional regulatory protein, C terminal (219 aa)
 
  0.963
R2601_19984
DNA-binding response regulator (222 aa)
 
  0.957
R2601_00155
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (222 aa)
   
  0.847
R2601_04818
Two-component system, regulatory protein (226 aa)
   
  0.793
R2601_09787
Cell cycle transcriptional regulator CtrA (231 aa)
 
   
  0.769
R2601_10949
DNA-binding response regulator PetR (233 aa)
   
  0.744
R2601_24944
Phosphate regulon transcriptional regulatory protein PhoB (229 aa)
   
  0.723
R2601_16885
DNA-binding response regulator ChvI (233 aa)
   
  0.699
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (156 aa)
              0.692
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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