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R2601_16545 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16545" - 5-hydroxyisourate hydrolase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_165455-hydroxyisourate hydrolase (119 aa)    
Predicted Functional Partners:
R2601_16550
Possible polysaccharide deacetylase (471 aa)
 
  0.973
R2601_01315
Polysaccharide deacetylase family protein (463 aa)
 
  0.934
R2601_16555
Ureidoglycolate lyase (165 aa)
 
          0.891
R2601_10359
Xanthine dehydrogenase, A subunit (460 aa)
 
 
    0.884
R2601_10354
Xanthine dehydrogenase, B subunit (818 aa)
 
 
    0.849
R2601_21001
Guanine deaminase (445 aa)
 
   
  0.829
R2601_01300
Uncharacterized protein (413 aa)
 
          0.824
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
       
  0.779
R2601_20986
Hydroxydechloroatrazine ethylaminohydrolase (446 aa)
 
        0.769
R2601_10349
Xanthine dehydrogenase accessory factor (316 aa)
 
          0.766
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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