STRINGSTRING
R2601_16610 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16610" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16610Uncharacterized protein (180 aa)    
Predicted Functional Partners:
R2601_16615
Uncharacterized protein (169 aa)
 
          0.634
R2601_16987
Uncharacterized protein (287 aa)
   
          0.623
R2601_16620
Possible methyltransferase (203 aa)
              0.578
R2601_16625
Uncharacterized protein (153 aa)
              0.535
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
 
          0.494
R2601_19295
Uncharacterized protein (55 aa)
   
          0.471
R2601_13915
Uncharacterized protein (182 aa)
   
          0.464
R2601_20169
Transcriptional regulator (182 aa)
   
          0.461
R2601_11149
Response regulator (122 aa)
   
          0.460
R2601_18518
Possible flagellar switch protein FliM (396 aa)
   
          0.447
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]