STRINGSTRING
R2601_16635 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16635" - Proteinase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16635Proteinase (186 aa)    
Predicted Functional Partners:
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
  0.928
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
   
 
  0.724
R2601_12805
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (214 aa)
   
 
  0.708
R2601_10042
Thiol-specific antioxidant protein (217 aa)
   
 
  0.708
R2601_18925
Probable lactoylglutathione lyase (144 aa)
   
    0.666
R2601_15482
Probable ring-cleaving dioxygenase (132 aa)
   
    0.666
R2601_14210
Lactoylglutathione lyase (131 aa)
   
    0.666
R2601_13734
Methylmalonyl-CoA epimerase (134 aa)
   
    0.666
R2601_10067
Glyoxylase I family protein (127 aa)
   
    0.666
R2601_06288
Glyoxalase family protein (180 aa)
   
    0.666
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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