STRINGSTRING
sfsA protein (Pelagibaca bermudensis) - STRING interaction network
"sfsA" - Sugar fermentation stimulation protein homolog in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfsASugar fermentation stimulation protein homolog (235 aa)    
Predicted Functional Partners:
R2601_16680
Molybdenum cofactor biosynthesis domain protein (240 aa)
              0.756
R2601_18233
A/G-specific adenine glycosylase (348 aa)
            0.740
R2601_16675
Acetyltransferase, GNAT family protein (242 aa)
              0.678
R2601_16670
Alkyl hydroperoxide reductase AhpD ; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (189 aa)
              0.676
R2601_16665
OmpA domain protein (310 aa)
              0.676
dksA
RNA polymerase-binding transcription factor DksA ; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters (140 aa)
   
        0.469
R2601_18543
DnaK suppressor protein (116 aa)
   
        0.469
R2601_08973
C4-type zinc finger protein, DksA/TraR family (89 aa)
   
        0.469
R2601_24150
Glutamyl-/ glutaminyl-tRNA synthetase (285 aa)
   
   
  0.464
R2601_14105
DNA repair protein RadC (253 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]