STRINGSTRING
R2601_16700 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16700" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16700Uncharacterized protein (195 aa)    
Predicted Functional Partners:
R2601_19337
Uncharacterized protein (274 aa)
   
          0.656
R2601_16705
Outer-membrane lipoprotein carrier protein ; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (193 aa)
              0.630
R2601_16695
FtsK/SpoIIIE family protein (1137 aa)
              0.469
R2601_14195
Cation antiporter (Na+/Ca2+) (342 aa)
   
          0.451
R2601_16690
Aminotransferase, classes I and II (393 aa)
              0.439
R2601_00470
FlbT protein (136 aa)
   
          0.419
R2601_20276
Bacteriophytochrome protein (256 aa)
 
          0.413
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]