STRINGSTRING
R2601_16725 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16725" - UPF0260 protein R2601_16725 in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16725UPF0260 protein R2601_16725 (156 aa)    
Predicted Functional Partners:
R2601_16730
Riboflavin biosynthesis protein (310 aa)
              0.887
R2601_16720
L-threonine aldolase, low-specificity, putative (359 aa)
              0.887
rnd
Ribonuclease D ; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (385 aa)
 
        0.740
R2601_24285
Predicted pyrophosphatase (278 aa)
   
        0.604
R2601_15497
Exonuclease, putative (204 aa)
 
        0.559
R2601_21186
Zinc uptake regulation protein (163 aa)
   
        0.544
R2601_24355
DNA polymerase III subunit chi (152 aa)
   
          0.506
R2601_17449
Uncharacterized protein (231 aa)
         
  0.477
R2601_18313
Uncharacterized protein ; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (66 aa)
              0.451
recR
Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (197 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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