STRINGSTRING
R2601_16810 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16810" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16810Uncharacterized protein (94 aa)    
Predicted Functional Partners:
R2601_16815
Uncharacterized protein (120 aa)
              0.669
pheS
Phenylalanyl-tRNA synthetase alpha subunit (356 aa)
              0.652
R2601_21221
Uncharacterized protein (249 aa)
   
          0.648
R2601_09295
Uncharacterized protein (151 aa)
   
          0.599
R2601_19295
Uncharacterized protein (55 aa)
   
          0.585
R2601_15065
Uncharacterized protein (500 aa)
   
          0.533
R2601_26376
Outer membrane protein, OmpA/MotB family (674 aa)
   
          0.524
R2601_23920
Uncharacterized protein (210 aa)
   
          0.516
R2601_13890
Efflux transporter, RND family, MFP subunit (487 aa)
   
          0.463
R2601_20169
Transcriptional regulator (182 aa)
   
          0.462
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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