STRINGSTRING
R2601_16825 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16825" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16825Uncharacterized protein (423 aa)    
Predicted Functional Partners:
R2601_16830
Glyceraldehyde-3-phosphate dehydrogenase (332 aa)
 
  0.969
R2601_16835
Transcriptional regulator/arsenate reductase (264 aa)
   
        0.763
R2601_24534
Glyceraldehyde-3-phosphate dehydrogenase, type I (335 aa)
   
  0.634
R2601_23263
Glyceraldehyde-3-phosphate dehydrogenase (333 aa)
   
  0.634
R2601_17404
Glyceraldehyde-3-phosphate dehydrogenase (333 aa)
   
  0.634
R2601_26841
Uncharacterized protein (192 aa)
   
          0.580
R2601_16820
Putative poly-beta-hydroxyalkanoate synthase (579 aa)
              0.552
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
     
      0.547
R2601_26426
Carbon monoxide dehydrogenase, large subunit (489 aa)
     
      0.540
R2601_26421
Carbon monoxide dehydrogenase, large subunit (315 aa)
     
      0.540
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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