STRINGSTRING
R2601_16905 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16905" - Feruloyl esterase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16905Feruloyl esterase (475 aa)    
Predicted Functional Partners:
R2601_04843
Uncharacterized protein (222 aa)
   
          0.632
R2601_17993
Putative orphan protein putative membrane protein (281 aa)
   
          0.621
R2601_04938
Uncharacterized protein (204 aa)
   
          0.605
R2601_16900
Uncharacterized protein (166 aa)
              0.565
acdS
1-aminocyclopropane-1-carboxylate deaminase ; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source (339 aa)
   
          0.562
R2601_09492
Putative binding protein dependent transport lipoprotein (450 aa)
   
          0.558
R2601_18780
Uncharacterized protein (171 aa)
   
          0.522
R2601_04993
Uncharacterized protein (163 aa)
   
          0.502
R2601_04848
Putative sensor histidine kinase protein (749 aa)
   
          0.461
R2601_18800
Amino acid ABC transporter, periplasmic substrate-binding protein, putative (290 aa)
   
          0.454
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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