STRINGSTRING
R2601_16947 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16947" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16947Uncharacterized protein (95 aa)    
Predicted Functional Partners:
R2601_16942
Uncharacterized protein (193 aa)
              0.859
R2601_18133
Extracellular solute-binding protein, family 5 (515 aa)
 
          0.667
R2601_16937
Uncharacterized protein (361 aa)
              0.599
R2601_01633
Trimethylamine methyltransferase MttB-like protein (490 aa)
   
          0.579
R2601_18930
Uncharacterized protein (242 aa)
   
          0.454
R2601_18138
ABC transporter permease protein (325 aa)
   
          0.442
R2601_14115
Translocase (334 aa)
   
          0.428
R2601_25341
Membrane protein (293 aa)
   
          0.427
R2601_01643
Oxidoreductase, NAD-binding site (440 aa)
   
          0.427
R2601_07976
Putative choline kinase protein (292 aa)
   
          0.422
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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