STRINGSTRING
R2601_16967 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16967" - Lipoprotein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16967Lipoprotein, putative (323 aa)    
Predicted Functional Partners:
R2601_16977
Uncharacterized protein (296 aa)
 
          0.933
R2601_16972
Tellurite resistance protein (400 aa)
 
          0.905
R2601_13759
Uncharacterized protein (88 aa)
   
          0.764
R2601_16982
Uncharacterized protein (29 aa)
              0.728
R2601_27171
Uncharacterized protein (336 aa)
 
          0.719
R2601_19554
Uncharacterized protein (150 aa)
   
          0.715
R2601_16987
Uncharacterized protein (287 aa)
 
          0.715
R2601_21276
Uncharacterized protein (84 aa)
   
          0.711
R2601_17334
Uncharacterized protein (156 aa)
   
          0.711
R2601_14895
Transcriptional regulator, putative (146 aa)
   
          0.694
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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