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R2601_16997 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16997" - Pseudouridine synthase in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Textmining
[Homology]
Score
R2601_16997Pseudouridine synthase (283 aa)    
Predicted Functional Partners:
der
GTP-binding protein EngA ; GTPase that plays an essential role in the late steps of ribosome biogenesis (487 aa)
 
   
  0.892
R2601_09522
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (350 aa)
 
  0.842
rlmN
tRNA m2A37 methyltransferase ; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity (398 aa)
 
      0.816
tadA
tRNA-specific adenosine deaminase ; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) (145 aa)
   
      0.785
R2601_17007
Pseudouridine synthase (179 aa)
 
 
0.772
R2601_05593
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
 
  0.757
R2601_11966
Methyltransferase, putative (185 aa)
 
        0.724
R2601_08246
Recombination protein N ; May be involved in recombinational repair of damaged DNA (553 aa)
 
        0.700
R2601_22292
ABC transporter, ATP-binding protein (608 aa)
 
        0.688
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (304 aa)
 
   
  0.676
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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