STRINGSTRING
R2601_17007 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17007" - Pseudouridine synthase in Pelagibaca bermudensis
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_17007Pseudouridine synthase (179 aa)    
Predicted Functional Partners:
tadA
tRNA-specific adenosine deaminase ; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) (145 aa)
   
      0.901
R2601_16997
Pseudouridine synthase (283 aa)
 
 
0.772
R2601_05593
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
 
  0.746
der
GTP-binding protein EngA ; GTPase that plays an essential role in the late steps of ribosome biogenesis (487 aa)
 
   
  0.692
R2601_10032
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (215 aa)
 
  0.686
R2601_09522
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (350 aa)
 
  0.677
R2601_11966
Methyltransferase, putative (185 aa)
   
        0.672
R2601_21882
Metallo-beta-lactamase family protein (555 aa)
   
        0.631
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
        0.612
ligA
Polydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (757 aa)
     
    0.606
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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