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R2601_17112 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17112" - Zinc metallopeptidase-like protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17112Zinc metallopeptidase-like protein (230 aa)    
Predicted Functional Partners:
R2601_17117
Transcriptional regulator, GntR family protein (216 aa)
              0.758
R2601_17107
Uncharacterized protein (106 aa)
              0.710
R2601_26481
Uncharacterized protein (380 aa)
 
          0.547
R2601_10414
Riboflavin biosynthesis protein RibD ; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate (350 aa)
              0.537
R2601_17859
Polyhydroxyalkanoate depolymerase, intracellular (419 aa)
 
          0.527
R2601_14980
Regulatory protein SenC (206 aa)
 
          0.521
R2601_22472
Acyltransferase, putative (274 aa)
              0.451
glyQ
Glycyl-tRNA synthetase alpha subunit (309 aa)
              0.451
glyS
Glycyl-tRNA synthetase beta subunit (741 aa)
              0.451
R2601_18925
Probable lactoylglutathione lyase (144 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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