STRINGSTRING
R2601_17122 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17122" - Efflux transporter, RND family, MFP subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17122Efflux transporter, RND family, MFP subunit (410 aa)    
Predicted Functional Partners:
R2601_17127
ABC transporter, permease protein (787 aa)
 
  0.996
R2601_17132
ABC transporter, ATP-binding protein (235 aa)
 
  0.994
R2601_27101
Uncharacterized protein (437 aa)
   
  0.904
R2601_21447
Nodulation protein (453 aa)
 
  0.875
R2601_21251
Nodulation protein T (377 aa)
 
  0.874
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
   
  0.856
lolD
Lipoprotein-releasing system ATP-binding protein LolD ; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner (227 aa)
   
  0.833
R2601_17147
NAD-dependent formate dehydrogenase, alpha subunit (973 aa)
              0.666
R2601_17142
Sulfurtransferase FdhD ; Required for formate dehydrogenase (FDH) activity (272 aa)
              0.666
R2601_17137
NAD-dependent formate dehydrogenase, delta subunit (74 aa)
              0.666
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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