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R2601_17132 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17132" - ABC transporter, ATP-binding protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17132ABC transporter, ATP-binding protein (235 aa)    
Predicted Functional Partners:
R2601_17122
Efflux transporter, RND family, MFP subunit (410 aa)
 
  0.994
R2601_17127
ABC transporter, permease protein (787 aa)
 
  0.993
R2601_17684
Lipoprotein releasing system transmembrane protein LolE (428 aa)
 
 
  0.854
R2601_26326
Efflux transporter, RND family, MFP subunit (441 aa)
   
  0.833
R2601_21447
Nodulation protein (453 aa)
   
  0.812
R2601_21251
Nodulation protein T (377 aa)
   
  0.812
R2601_27101
Uncharacterized protein (437 aa)
   
  0.801
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
   
  0.792
ccmA
Heme exporter protein A ; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (204 aa)
 
 
  0.772
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components (462 aa)
 
   
  0.684
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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