STRINGSTRING
R2601_17162 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17162" - Transcriptional regulator, LysR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17162Transcriptional regulator, LysR family protein (296 aa)    
Predicted Functional Partners:
R2601_17137
NAD-dependent formate dehydrogenase, delta subunit (74 aa)
 
          0.912
R2601_17147
NAD-dependent formate dehydrogenase, alpha subunit (973 aa)
 
          0.851
R2601_17157
ATP synthase subunit E (155 aa)
 
          0.796
R2601_17142
Sulfurtransferase FdhD ; Required for formate dehydrogenase (FDH) activity (272 aa)
 
          0.796
R2601_17152
NAD dependent formate dehydrogenase, beta subunit (51 kDa) (506 aa)
 
          0.780
R2601_20966
Transcriptional regulator, LysR family protein (290 aa)
   
          0.732
R2601_00570
Transcriptional regulatory protein (308 aa)
   
          0.721
R2601_09188
Putative transcriptional regulator (180 aa)
   
          0.712
R2601_19899
Transcriptional regulator, LysR family protein (296 aa)
   
          0.694
R2601_13144
Pca operon transcriptional activator PcaQ (175 aa)
   
          0.598
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (13%) [HD]