STRINGSTRING
R2601_17284 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17284" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17284Uncharacterized protein (1579 aa)    
Predicted Functional Partners:
R2601_17289
Putative outer membrane protein (603 aa)
 
  0.992
R2601_17017
Uncharacterized protein (114 aa)
   
          0.577
R2601_25731
Uncharacterized protein (865 aa)
   
          0.521
R2601_10634
Uncharacterized protein (179 aa)
   
          0.509
R2601_11064
Metal-dependent hydrolase (223 aa)
   
        0.504
R2601_10117
Transglycosylase SLT domain protein (158 aa)
 
 
      0.496
R2601_25291
Uncharacterized protein (261 aa)
   
          0.495
rlmJ
23S rRNA m6A2030 methyltransferase ; Specifically methylates the adenine in position 2030 of 23S rRNA (261 aa)
 
          0.476
R2601_07831
Uncharacterized protein (589 aa)
   
          0.475
R2601_19265
Phosphatase, Ppx/GppA family protein (517 aa)
 
          0.446
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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